chr6:26091475:G>T Detail (hg38) (HFE)

Go to:

Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr6:26,091,703-26,091,703 View the variant detail on this assembly version.
hg38	chr6:26,091,475-26,091,475

HGVS

HFE

Type	Transcript	Protein
RefSeq	NM_139004.2:c.340+371G>T
	NM_139003.2:c.340+371G>T
	NM_139007.2:c.238G>T	NP_620576.1:p.Glu80Ter
	NM_139008.2:c.238G>T	NP_620577.1:p.Glu80Ter
	NM_139011.2:c.77-1644G>T
	NM_139010.2:c.77-1210G>T
	NM_000410.3:c.502G>T	NP_000401.1:p.Glu168Ter
	NM_001300749.1:c.502G>T	NP_001287678.1:p.Glu168Ter
	NM_139009.2:c.433G>T	NP_620578.1:p.Glu145Ter
	NM_139006.2:c.502G>T	NP_620575.1:p.Glu168Ter
Ensemble	ENST00000309234.11:c.502G>T	ENST00000309234.11:p.Glu168Ter
	ENST00000317896.11:c.340+371G>T
	ENST00000336625.12:c.340+371G>T
	ENST00000349999.8:c.238G>T	ENST00000349999.8:p.Glu80Ter
	ENST00000352392.8:c.77-1644G>T
	ENST00000353147.9:c.77-1210G>T
	ENST00000357618.10:c.502G>T	ENST00000357618.10:p.Glu168Ter
	ENST00000397022.7:c.433G>T	ENST00000397022.7:p.Glu145Ter
	ENST00000461397.6:c.502G>T	ENST00000461397.6:p.Glu168Ter
	ENST00000470149.5:c.502G>T	ENST00000470149.5:p.Glu168Ter
	ENST00000485729.2:c.502G>T	ENST00000485729.2:p.Glu168Ter
	ENST00000488199.5:c.238G>T	ENST00000488199.5:p.Glu80Ter
	ENST00000714164.1:c.77-2711G>T
	ENST00000714170.1:c.400G>T	ENST00000714170.1:p.Glu134Ter
	ENST00000714172.1:c.340+371G>T
	ENST00000714174.1:c.428+283G>T

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
Show details

Links

HFE

Type	Database	ID	Link
Gene	MIM	613609	OMIM
	HGNC	4886	HGNC
	Ensembl	ENSG00000010704	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
not provided		no assertion provided	hemochromatosis type 1	germline	Detail
Pathogenic	2022-12-29	criteria provided, single submitter	Hereditary hemochromatosis	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.170	Iron Overload	Here we propose a rational diagnostic algorithm for hepatic iron overload syndro...	BeFree	19214108	Detail
<0.001	Acute lymphocytic leukemia	We studied the prevalence of 12 hereditary hemochromatosis (HH) gene mutations (...	BeFree	15863206	Detail
0.009	Precursor Cell Lymphoblastic Leukemia Lymphoma	We studied the prevalence of 12 hereditary hemochromatosis (HH) gene mutations (...	BeFree	15863206	Detail
<0.001	Leukemia, Myelocytic, Acute	We studied the prevalence of 12 hereditary hemochromatosis (HH) gene mutations (...	BeFree	15863206	Detail
<0.001	Precursor Cell Lymphoblastic Leukemia Lymphoma	We studied the prevalence of 12 hereditary hemochromatosis (HH) gene mutations (...	BeFree	15863206	Detail
0.001	Leukemia, Myelocytic, Acute	We studied the prevalence of 12 hereditary hemochromatosis (HH) gene mutations (...	BeFree	15863206	Detail
<0.001	Acute lymphocytic leukemia	We studied the prevalence of 12 hereditary hemochromatosis (HH) gene mutations (...	BeFree	15863206	Detail
0.205	Hereditary hemochromatosis	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000410.4(HFE):c.502G>T (p.Glu168Ter) AND Hemochromatosis type 1	ClinVar	Detail
NM_000410.4(HFE):c.502G>T (p.Glu168Ter) AND Hereditary hemochromatosis	ClinVar	Detail
Here we propose a rational diagnostic algorithm for hepatic iron overload syndromes and illustrate p...	DisGeNET	Detail
We studied the prevalence of 12 hereditary hemochromatosis (HH) gene mutations (C282Y, V53M, V59M, H...	DisGeNET	Detail
We studied the prevalence of 12 hereditary hemochromatosis (HH) gene mutations (C282Y, V53M, V59M, H...	DisGeNET	Detail
We studied the prevalence of 12 hereditary hemochromatosis (HH) gene mutations (C282Y, V53M, V59M, H...	DisGeNET	Detail
We studied the prevalence of 12 hereditary hemochromatosis (HH) gene mutations (C282Y, V53M, V59M, H...	DisGeNET	Detail
We studied the prevalence of 12 hereditary hemochromatosis (HH) gene mutations (C282Y, V53M, V59M, H...	DisGeNET	Detail
We studied the prevalence of 12 hereditary hemochromatosis (HH) gene mutations (C282Y, V53M, V59M, H...	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs146519482 dbSNP
Genome: hg38
Position: chr6:26,091,475-26,091,475
Variant Type: snv
Reference Allele: G
Alternative Allele: T

Genome browser